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DecouplR provides a variety of enrichment tools with a cleaner implementation

enhancementNew feature or requestNew feature or request

Status: Open.

#64 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Jul 21, 2025

Ensure consistency of multiple test correction methods

Status: Open.

#50 In EngreitzLab/gene_network_evaluation;

· adamklie opened on Sep 12, 2024

Fix: categorical association dataframe output

bugSomething isn't workingSomething isn't working

dashboard

enhancementNew feature or requestNew feature or request

evaluations

Status: Open.

#46 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Sep 9, 2024

·  

2024 Gene Program Jamboree

Code maintenance and good practices

enhancementNew feature or requestNew feature or request

Status: Open.

#41 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Sep 5, 2024

Add an evaluation for model robustness

discussion

enhancementNew feature or requestNew feature or request

Status: Open.

#36 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Sep 5, 2024

Expose motif match significance threshold to users for motif enrichment

enhancementNew feature or requestNew feature or request

Status: Open.

#34 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Sep 5, 2024

·  

2024 Gene Program Jamboree

Add support for perturbation association tests stratified per categorical level

enhancementNew feature or requestNew feature or request

evaluations

Status: Open.

#33 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Sep 5, 2024

·  

2024 Gene Program Jamboree

Calibration of association tests

dashboard

enhancementNew feature or requestNew feature or request

Status: Open.

#32 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Sep 5, 2024

General procedure to assess goodness of fit rather than explained variance ratio.

discussion

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In EngreitzLab/gene_network_evaluation;

· aron0093 opened on Sep 5, 2024

Update gene set enrichment functionality

enhancementNew feature or requestNew feature or request

evaluations

Status: Open.

#29 In EngreitzLab/gene_network_evaluation;

· adamklie opened on Aug 22, 2024

·  

2024 Gene Program Jamboree

GSEA plot for individual program / term enrichment

dashboard

discussion

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In EngreitzLab/gene_network_evaluation;

· adamklie opened on Aug 21, 2024

Align dashboard with config from evaluation pipeline

dashboard

enhancementNew feature or requestNew feature or request

Status: Open.

#27 In EngreitzLab/gene_network_evaluation;

· adamklie opened on Aug 21, 2024

·  

2024 Gene Program Jamboree