Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
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Updated
Nov 19, 2025 - Python
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
PhenoPLIER
Robust and scalable single-cell signature scoring
PhenoPLIER manuscript
BADDADAN is a proof of concept which builds ODE models of gene modules to study the response of A. thaliana to stress
This repository contains MSc thesis results using BIONIC (developed by Duncan Forster at The University of Toronto) for the prediction of Arabidopsis's temperature-responsive gene modules.
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